JR, I agree that we are just guessing here. A sample would need to be viewed microscopically to be certain.
The "patch" is not the residual effect of the slime coat being disturbed, but rather the colony itself, and becomes raised and quite pronounced. It is rubbery to the touch and cohesive. The protozoan use the host as an attachment site from which to feed. Outbreaks are triggered by high organic loads. I would not rule out fungus, but fungus feeds off host tissue and we don't see that here. Finally, carp pox is actual tissue that was mutated by a virus. This tissue is vascularized and if removed will bleed and scar. It's just deductive reasoning and a guess, but I don't see that we are left with many other culprits than some form of sessile, colonial protozoan when you look at what we know. It's a good discussion because I believe this is widespread and usually misdiagnosed.
Richard