I have the same problem though currently my filtration is not as advanced as ootyboy's. My 3000 gallon pond with 30 ft long x 4.5ft stream has been up and running with roughly 300 gallons per koi for about 4 months.
Someone said a few posts back that the suspended algae helps establish the nitrifiers and keep nitrite, nitrate, and ammonia down during cycling and maturation.
A day or two before I introduced my koi to their new pond I seeded it with every bit of bacteria from their old ponds biological filter that I could and ammonia and nitrite were never a problem.
Also heard that algae cause pH swing but I am closely regulating with baking soda, epsom salt and calcium chloride for GH & KH.
I live in SC which has nightly lows in lower 40's and highs of upper 60's now on average so should I just go ahead and turn on the UV that I have coming in the mail or wait a month or 2 for it to warm up so that the beneficial bacteria begin to multiply at a much faster rate and can do the job on their own??